PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000118897
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 149aa    MW: 16222.8 Da    PI: 8.2847
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000118897genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH413.3e-13935127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   +++++C+f+++tG Ck+G+ C+F+H++
  MDP0000118897  9 PGQPECQFYMKTGDCKFGAVCRFHHPM 35
                   5789*********************95 PP

2zf-CCCH37.34.5e-125581127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   ++++ C f++r+G+Ck+G++CkF H++
  MDP0000118897 55 PGEPMCIFYSRYGICKFGPSCKFXHPM 81
                   57899********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.3E-6835IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.361836IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-91035IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-61238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-51436IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-65481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3145482IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-85781IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-65781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-55979IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
RENVFPERPG QPECQFYMKT GDCKFGAVCR FHHPMERLIP APDCVLSPIG LPLRPGEPMC  60
IFYSRYGICK FGPSCKFXHP MGIFTYGLSA SSSADAPARR LLGSTSGAAS LNLASSGLVX  120
AGSANPRRVS LSEPRQMPSA EXNNIDREE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.8450.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389043.11e-104PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF97e-78ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM5VZ664e-87M5VZ66_PRUPE; Uncharacterized protein
STRINGPOPTR_0019s08030.12e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.12e-51zinc finger nuclease 3